Software

Research software for microscopy and data analysis workflows.

I build tools that remove friction from cryo-EM processing, structure prediction screens, and single-molecule tracking.

GUI

Tracy

Graphical interface for processing single-molecule fluorescence data. Uses kymographs for robust particle tracking and organizes track behavior.

Built with PyQt, matplotlib, numpy, scipy.

GitHub

Download for Mac

Download for Windows

GUI

Subflow

Graphical interface for cryo-EM image processing pipelines, enabling on-the-fly analysis and filament subtraction.

Built with tkinter, pandas, cryosparc-tools, mrcfile.

GitHub

CLI

AlphaScreen

Command-line interface for AlphaFold prediction screens. Retrieves sequences, generates optimized inputs for pairwise predictions, and ranks interactions.

Built with pandas, matplotlib, numpy, pymol, biopython.

GitHub

CLI

Starparser

Command-line interface to mine RELION .star files, with 40+ functions for inspection, filtering, and reporting.

Built with pandas, matplotlib, numpy, scipy.

GitHub